seqMINER: good tool for ChIP-seq data visualization

A java tool that runs in Win/Linux/MacOSX that lets you upload alignments from chIP-seq datasets to view profiles around TSS or chosen genome co-ordinates:

Paper: http://www.ncbi.nlm.nih.gov/pubmed/21177645?dopt=Abstract

Software: http://bips.u-strasbg.fr/seqminer/tiki-index.php

Beyond the Genome 2011: Day 3: Microbiome sequencing

The focus was on large scale microbial sequencing efforts under the NIH microbiome grant. Presentations by JCVI, NIAID, Scripps.

Beyond the Genome 2011: Day 2: Exome sequencing

A complete overview of all challenges, achievements, case studies and future plans on using exome sequencing.

Beyond the Genome 2011: Day 1: Cancer Genomics

Today's presentations highlighted how challenging it is to study the cancer genome. Also highlighted the need for bioinformaticians to get a grip on human genetics in order to correctly interpret genomic datasets, specially sequencing results.

2011 NAR Database Summary Paper Category List

Nucleotide Sequence Databases

RNA sequence databases

Protein sequence databases

Structure Databases

Genomics Databases (non-vertebrate)

Metabolic and Signaling Pathways

Human and other Vertebrate Genomes

Human Genes and Diseases

Microarray Data and other Gene Expression Databases

Proteomics Resources

Other Molecular Biology Databases

Organelle databases

Plant databases

Immunological databases

Beyond the Genome 2011: Workshop

Informatics workshop:
Cutting edge presentations by Mike Schatz, Ben Langmead and James Taylor, highlighting implementations of reproducible bionformatics workflows on the Amazon EC2 cloud computing platform.